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I might try that later because, like I said earlier, I got the version of MPV that’s already installed to play YouTube videos and that fine for me. I also made configurations to the preinstalled version and I don’t know if it would be easy, or even possible, to transfer them to the flatpak version.
For the flatpak version the mpv.conf file can be created in
~/.var/app/io.mpv.Mpv/config/mpv/
. You probably don’t need to link it to the yt-dlp python file as the flatpak mpv version should come with the latest yt-dlp.